FastQCFastQC Report
Fri 10 May 2024
EGAF00004827504

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827504
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14951466
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA761780.5095018776085235No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT573430.38352760859704327No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT535910.3584330794050563No Hit
TGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAG314710.21048772073587965No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC305110.20406694567609626No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA280840.18783442372808126No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA262660.17567508095861636No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG252520.16889313730172012No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN230230.15398490020978545No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG230030.15385113406270662No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC214210.14327023182877183No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT198820.13297692681105652No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT198660.13286991389339348No Hit
GGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCGGG194870.1303350454062498No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT193720.12956589006054658No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC190340.12730524217491448No Hit
GGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGG186240.12456303615979865No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG161380.10793590407790113No Hit
CGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCG158600.1060765546335055No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT157470.10532077590251017No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA155400.10393629628024435No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)