FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004827508

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827508
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13443572
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT312640.2325572399954417No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN204580.15217681729230892No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA195520.14543753698793743No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC192750.14337707270061856No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA165500.12310716229287871No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG147560.1097624946703153No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG143290.10658625549816671No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)