FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004827510

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827510
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13419677
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT311060.23179395450427012No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN214070.15951948768960683No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA195950.1460169272330474No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC192990.14381121095537547No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA166580.12413115457249826No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG146200.1089444999309596No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG144170.10743179586215079No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)