EGAF00004827522 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004827522
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	12455736
Sequences flagged as poor quality	0
Sequence length	100
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT	132201	1.0613664258780051	No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG	72535	0.5823421434108751	No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA	23300	0.18706241044286745	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	20532	0.1648397172194401	No Hit
CTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTC	20204	0.16220639229990103	No Hit
CTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGT	16117	0.1293942003908882	No Hit
CGCAGTTTTATCCGGTAAAGCGAATGATTAGAGGTCTTGGGGCCGAAACG	14862	0.11931852120179812	No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC	13984	0.11226955998425144	No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC	13796	0.1107602152132961	No Hit
GTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCA	12724	0.10215373864699766	No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA	12671	0.10172823187646239	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCACCCG	19925	63.91231	3
CACCCGG	20135	63.055595	4
ACCCGGC	21240	59.77227	5
CCAGTAG	13325	52.82568	5
CTCACCC	24410	52.30564	2
CGACCGT	1610	51.99248	1
TAGCATA	14160	49.555645	9
GTAGCAT	14385	49.008648	8
CGGCCCG	26030	48.84099	8
CAGTAGC	15415	45.704044	6
GCGATTT	26065	45.27509	94
GCCAGTA	15790	44.81938	4
CCTCACC	29980	43.607346	1
TGCCAGT	16660	42.36819	3
ACCGTTG	1965	42.119606	3
CGCAAAA	3550	38.15141	1
CCCGGCC	33970	37.868298	6
CCGGCCC	35755	36.582172	7
GACCGTT	2260	36.414642	2
CGGACAC	20335	36.055664	12-13