EGAF00004827524 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004827524
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	12321060
Sequences flagged as poor quality	0
Sequence length	100
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT	130506	1.059210814653934	No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG	70280	0.5704054683606767	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	23432	0.19017844243920573	No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA	22739	0.18455392636672494	No Hit
CTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTC	20020	0.1624860198716669	No Hit
CTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGT	15492	0.12573593505753564	No Hit
CGCAGTTTTATCCGGTAAAGCGAATGATTAGAGGTCTTGGGGCCGAAACG	14718	0.11945400801554411	No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC	13658	0.11085085211824308	No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC	13631	0.11063171512840615	No Hit
GTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCA	12539	0.10176884131722433	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCACCCG	19730	63.622047	3
CACCCGG	20255	61.94928	4
ACCCGGC	21385	58.564957	5
CGACCGT	1545	54.465496	1
CCAGTAG	12640	53.40971	5
CTCACCC	24335	52.10445	2
TAGCATA	14025	48.531895	9
GTAGCAT	14055	48.327972	8
CGGCCCG	26040	48.23442	8
CAGTAGC	14320	47.331116	6
GCCAGTA	14965	45.175404	4
ACCGTTG	1920	44.80983	3
GCGATTT	25645	44.604866	94
CCTCACC	29640	43.410378	1
TGCCAGT	15910	42.52204	3
GACCGTT	2090	39.815502	2
CCCGGCC	33380	37.934616	6
CCGGCCC	35230	36.573227	7
CGGACAC	20330	35.768543	12-13
CGCAAAA	3795	35.676125	1