FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004827548

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827548
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12186338
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT603960.49560417575813176No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC316240.2595037163748453No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC308060.2527912815154151No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG273020.22403777082171855No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG216960.1780354360760386No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT200230.16430694766549228No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN192680.15811148517298632No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT189040.15512453371964574No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA177210.14541694149628873No Hit
CCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCCGGGTACT175530.1440383485178238No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG160610.13179512992336173No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC146220.11998682458996296No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG139500.11447245267610336No Hit
CCCATATTCCTTACACTATTCCTCATCACCCAACTAAAAATATTAAACAC137120.11251944595661141No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG136250.11180553173562066No Hit
CAAGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGA124540.10219641043929686No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)