FastQCFastQC Report
Wed 8 May 2024
EGAF00004827554

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827554
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10894740
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT428450.39326317103482966No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC330850.30367865593855387No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC285910.2624293925325432No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG211630.19424970214984477No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT197300.1810965658657297No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN191420.1756994659808311No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT178380.1637303873245254No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG175550.16113280353638543No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA173600.1593429489827201No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG171740.1576357031007624No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG158250.14525358108591852No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC155580.14280285715859212No Hit
CCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCCGGGTACT155510.1427386059694862No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT127240.1167903043119891No Hit
CAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCC120200.11032847043619214No Hit
CCCATATTCCTTACACTATTCCTCATCACCCAACTAAAAATATTAAACAC118970.10919948525618785No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT115930.10640914790073007No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG113110.10382074285389097No Hit
CAAGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGA109230.10025939122916196No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)