FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004827562

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827562
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11752852
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT674410.5738266762824887No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG320580.27276783541560806No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC250630.21325036680458495No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC239860.20408663361029308No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT219260.18655897309010613No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN190450.1620457740810486No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA186120.1583615619425821No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT184460.15694913881328548No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG172550.14681542828923566No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA157610.13410362012556612No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC142550.12128970908507994No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA136830.11642280529015425No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT121340.10324302560774186No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG117990.10039265362994446No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)