FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004827570

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827570
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13078296
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT567920.4342461739663944No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC303290.23190329994060388No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG289420.22129794279010048No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC286450.21902700474129044No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT234020.1789376842365397No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG204040.15601420857885462No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA198430.15172465893110235No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT194800.14894906798255675No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN187300.1432143759401072No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC158790.12141489992274224No Hit
CCCATATTCCTTACACTATTCCTCATCACCCAACTAAAAATATTAAACAC149910.11462502454448194No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG143860.1099990396302393No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT136940.1047078304390725No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)