EGAF00004827577 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004827577
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	13704675
Sequences flagged as poor quality	0
Sequence length	100
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCCAAATCTTTAAACCGATGAGCAACCTCACTCTTGTGTGCATCTCGACG	36420	0.2657487317284065	No Hit
CTCCTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTA	18618	0.1358514521504523	No Hit
GGCTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTT	16145	0.1178065149301242	No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA	15024	0.10962682442305272	No Hit
CAAATCTTTAAACCGATGAGCAACCTCACTCTTGTGTGCATCTCGACGAA	14627	0.10673000271805058	No Hit
CTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAACAGGGTCT	14561	0.10624841523056913	No Hit
CCCGAAGTTACGGATCCGGCTTGCCGACTTCCCTTACCTACATTGTTCCA	13895	0.10138875967507438	No Hit
CTTGATTTGTCTCTCCTTCTCAGAAAGTGTGCATATATCTGCATGGAAGG	13857	0.10111148203076688	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCCGTAT	2690	38.51836	1
GTATCGA	2495	36.732006	4
TGTCGAG	1230	28.275297	5
GTTACGA	1515	28.229898	4
ACGACTT	3010	28.008116	1
TATCGAA	3425	27.306942	5
TTACGAC	1565	26.727371	5
TGTTACG	1765	23.965052	3
CGTACGC	4545	23.886837	5
CCGTACG	4580	23.704298	4
GAAATAA	15920	23.678007	94
GTCGAGG	1550	22.74103	6
TCCGTAC	4825	22.695467	3
GTACGCC	4855	22.458424	6
TACGCCA	4945	21.954638	7
CGTATCG	6940	21.670607	3
ATCGAAG	7960	21.432564	6
CCGTATC	6935	21.281555	2
CCCAAAT	21415	21.025057	1
CGCCCTT	1905	21.01461	1