FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004827582

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827582
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12731338
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCA454100.3566789287975859No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT232790.1828480243003524No Hit
CTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCAAT191970.1507854084150464No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN191260.1502277294028326No Hit
CACTGACCTGGGACAGTGAATCGACAATGCCGTCTTCTGTCTCGTGGGGC173470.13625433556158825No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)