FastQCFastQC Report
Wed 8 May 2024
EGAF00004827584

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827584
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12608836
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCA448900.35602017505818934No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT234140.1856951743999208No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN221110.1753611514972516No Hit
CTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCAAT188460.14946661214405516No Hit
CACTGACCTGGGACAGTGAATCGACAATGCCGTCTTCTGTCTCGTGGGGC170370.13511953046260575No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)