FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004827598

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827598
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10923795
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT268990.24624226287659187No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN155680.14251457483411215No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG150440.13771770707890435No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC135590.12412353032988993No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA122740.11236021913629832No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC121070.11083144639752027No Hit
CCAAGATGAGTGCCCTGGGAGCTGTCATTGCCCTCCTGCTCTGGGGACAG120060.10990685929203176No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT116930.10704155469779504No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)