FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004827603

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827603
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14353666
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGTG1407132498.03296245015036No Hit
NCAGTG568420.39601032934722047No Hit
ATAGTG306930.21383387352053476No Hit
ACAGCG207000.14421402866696215No Hit
ACAGTT183920.12813451281366028No Hit
CCAGTG170600.11885465357769924No Hit
ACAGTA160270.11165788586692765No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)