FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004827609

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827609
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14223422
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGTG1391275497.81579988275678No Hit
NCAGTG872340.6133123238556798No Hit
ATAGTG293980.2066872514926436No Hit
ACAGCG199100.13998037884272857No Hit
ACAGTT187330.1317052956735728No Hit
CCAGTG178810.12571517599632495No Hit
ACAGTA164770.11584413371128272No Hit
ACCGTG142780.10038371919218878No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)