FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004827612

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827612
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13549807
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCAAT1324301497.73581276840328No Hit
NCCAAT535900.39550378835654265No Hit
GCCACT278030.205191114530266No Hit
ACCAAT255650.18867427410589685No Hit
GCTAAT254600.18789935531923074No Hit
GCCAAA250000.18450447301574113No Hit
GTCAAT233720.17248954173295605No Hit
GCCCAT186460.13761081615406034No Hit
TCCAAT166410.12281355741819791No Hit
GACAAT162190.11969912191369221No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)