FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004827613

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827613
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13549807
Sequences flagged as poor quality0
Sequence length100
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGAGGTTGCGGTCTGTTAGTAGTATAGTGATGCCAGCAGCTAGGACTG531010.39189488086435476No Hit
GGACGATTAGTTTTAGCATTGGAGTAGGTTTAGGTTATGTACGTAGTCTA298120.22001789398181099No Hit
GTGAATGTTATAATTAAGGAGATTTGTAGGGAGATTAGTATAGAGAGGTA254970.18817242193929404No Hit
GTCGGAGGAAAAGGTTGGGGAACAGCTAAATAGGTTGTTGTTGATTTGGT252330.18622405470424783No Hit
GGGGGTCTTAGCTTTGGCTCTCCTTGCAAAGTTATTTCTAGTTAATTCAT243670.17983281975898255No Hit
GTTGAGGGTTATGAGAGTAGCTATAATGAACAGCGATAGTATTATTCCTT240270.17732355892596846No Hit
GGGACGATTAGTTTTAGCATTGGAGTAGGTTTAGGTTATGTACGTAGTCT213960.15790630818579188No Hit
GGGGCAATGAATGAAGCGAACAGATTTTCGTTCATTTTGGTTCTCAGGGT210850.15561107254147605No Hit
GTTTGGTATTGGGTTATGGCAGGGGGTTTTATATTGATAATTGTTGTGAT204440.15088037785335245No Hit
GGTTGGTGTAAATGAGTGAGGCAGGAGTCCGAGGAGGTTAGTTGTGGCAA198860.14676223801564112No Hit
GAAGAAAGTTAGATTTACGCCGATGAATATGATAGTGAAATGGATTTTGG198630.14659249390046664No Hit
GTGTAAATGAGTGAGGCAGGAGTCCGAGGAGGTTAGTTGTGGCAATAAAA192400.14199464243291435No Hit
GTTAATTGTCAGTTCAGTGTTTTAATCTGACGCAGGCTTATGCGGAGGAG187230.13817908993094882No Hit
GTGGTGTTGAGGTTGCGGTCTGTTAGTAGTATAGTGATGCCAGCAGCTAG184990.1365259298527278No Hit
GGGCAATGAATGAAGCGAACAGATTTTCGTTCATTTTGGTTCTCAGGGTT179050.1321421035738738No Hit
GGCGTTTGGTATTGGGTTATGGCAGGGGGTTTTATATTGATAATTGTTGT175720.1296845039933041No Hit
GGCAAATTTAAAGTTGAACTAAGATTCTATCTTGGACAACCAGCTATCAC150030.11072482434620655No Hit
GTGGGAAGAAAGTTAGATTTACGCCGATGAATATGATAGTGAAATGGATT145460.10735208257947881No Hit
TGTGAATGTTATAATTAAGGAGATTTGTAGGGAGATTAGTATAGAGAGGT141060.10410480385440177No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)