FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004827615

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827615
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13514519
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCAAT1320052697.67662467306457No Hit
NCCAAT560160.41448755963863754No Hit
GCCACT282580.20909364217846005No Hit
ACCAAT265420.19639618694531416No Hit
GCTAAT256880.19007705712648743No Hit
GCCAAA248200.18365433501554884No Hit
GTCAAT223250.1651927086713186No Hit
GCCCAT195590.1447258315297792No Hit
TCCAAT178030.13173239831917066No Hit
GACAAT155380.11497264534535044No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)