FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004827618

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827618
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13544262
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCAAT1320636797.50525351621225No Hit
NCCAAT839110.6195317249474354No Hit
GCCACT272720.2013546400682444No Hit
ACCAAT258890.19114367397795465No Hit
GCTAAT258230.19065638275455687No Hit
GCCAAA247450.18269729277239322No Hit
GTCAAT221550.16357480385420778No Hit
GCCCAT192640.14222997162931433No Hit
TCCAAT172570.12741188851780924No Hit
GACAAT152040.11225417818999661No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)