FastQCFastQC Report
Fri 10 May 2024
EGAF00004827619

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827619
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13544262
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGAGGTTGCGGTCTGTTAGTAGTATAGTGATGCCAGCAGCTAGGACTG536790.39632281182983614No Hit
GGACGATTAGTTTTAGCATTGGAGTAGGTTTAGGTTATGTACGTAGTCTA299860.22139264583038928No Hit
GTGAATGTTATAATTAAGGAGATTTGTAGGGAGATTAGTATAGAGAGGTA253950.18749637300282584No Hit
GTCGGAGGAAAAGGTTGGGGAACAGCTAAATAGGTTGTTGTTGATTTGGT248550.1835094448113895No Hit
GGGGGTCTTAGCTTTGGCTCTCCTTGCAAAGTTATTTCTAGTTAATTCAT244740.18069644547632052No Hit
GTTGAGGGTTATGAGAGTAGCTATAATGAACAGCGATAGTATTATTCCTT238700.17623699246219543No Hit
GGGACGATTAGTTTTAGCATTGGAGTAGGTTTAGGTTATGTACGTAGTCT212820.157129269944719No Hit
GGGGCAATGAATGAAGCGAACAGATTTTCGTTCATTTTGGTTCTCAGGGT209760.15487001063623843No Hit
GTTTGGTATTGGGTTATGGCAGGGGGTTTTATATTGATAATTGTTGTGAT206350.15235233931534992No Hit
GAAGAAAGTTAGATTTACGCCGATGAATATGATAGTGAAATGGATTTTGG198740.1467337238455665No Hit
GGTTGGTGTAAATGAGTGAGGCAGGAGTCCGAGGAGGTTAGTTGTGGCAA197640.1459215718065702No Hit
GTGTAAATGAGTGAGGCAGGAGTCCGAGGAGGTTAGTTGTGGCAATAAAA192150.14186819481194324No Hit
GTTAATTGTCAGTTCAGTGTTTTAATCTGACGCAGGCTTATGCGGAGGAG188370.13907734507793781No Hit
GTGGTGTTGAGGTTGCGGTCTGTTAGTAGTATAGTGATGCCAGCAGCTAG187470.13841285704603176No Hit
GGGCAATGAATGAAGCGAACAGATTTTCGTTCATTTTGGTTCTCAGGGTT181240.13381312322517092No Hit
GGCGTTTGGTATTGGGTTATGGCAGGGGGTTTTATATTGATAATTGTTGT175410.12950871741849057No Hit
GGCAAATTTAAAGTTGAACTAAGATTCTATCTTGGACAACCAGCTATCAC150120.11083660372193035No Hit
TGTGAATGTTATAATTAAGGAGATTTGTAGGGAGATTAGTATAGAGAGGT143650.10605967309256126No Hit
GTGGGAAGAAAGTTAGATTTACGCCGATGAATATGATAGTGAAATGGATT143340.1058307938815714No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)