FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004827621

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827621
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12126275
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGTA1186977197.88472552370781No Hit
NTTGTA481850.3973602775790587No Hit
CTTGTC309580.25529686569041193No Hit
ATTGTA163120.1345178135907358No Hit
CATGTA159840.13181294338121147No Hit
CTTTTA144390.11907201510768971No Hit
CGTGTA142900.11784327833568016No Hit
TTTGTA137370.11328293313486625No Hit
CTTGAA132050.10889576559990599No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)