FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004827624

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827624
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12101236
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGTA1184124497.85152524915637No Hit
NTTGTA497810.41137120208216743No Hit
CTTGTC312330.2580976025919997No Hit
ATTGTA168600.13932461113889524No Hit
CATGTA152830.12629288446238054No Hit
CTTTTA144770.11963240779702172No Hit
TTTGTA139330.11513699922883909No Hit
CTTGAA136030.11241000506064008No Hit
CGTGTA131170.10839388637656516No Hit
CTAGTA128290.10601396419340967No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)