FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004827627

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827627
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12121571
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGTA1184038797.6803006804976No Hit
NTTGTA747020.6162732536896415No Hit
CTTGTC303200.25013259419921724No Hit
ATTGTA166180.1370944409763388No Hit
CATGTA146670.12099916751714775No Hit
CTTGAA144560.11925846905487747No Hit
TTTGTA142040.11717953060704756No Hit
CTTTTA140790.11614831113887795No Hit
CTAGTA129450.10679308812364338No Hit
CGTGTA124710.10288270390034428No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)