FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004827648

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827648
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13262918
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGATC1295126597.65019281578911No Hit
NAGATC521830.3934503704237635No Hit
CAGCTC309820.23359866961403217No Hit
CAGTTC292730.2207131190888762No Hit
CAGATT265920.20049886457866964No Hit
CAGATA258200.19467812437655121No Hit
TAGATC245720.1852684303710541No Hit
AAGATC144770.10915395842754966No Hit
CATATC142520.10745749917175089No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)