FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004827650

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827650
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13262918
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC259390.1955753628273959No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT240090.18102351232209987No Hit
CCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCCGGGTACT188490.14211804672244827No Hit
CACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTTTCT187680.1415073213903607No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC173960.13116268983944557No Hit
CCAAGATGAGTGCCCTGGGAGCTGTCATTGCCCTCCTGCTCTGGGGACAG170500.12855391249497283No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG157530.1187747673626573No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT146230.11025477198909019No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG137730.10384592591162818No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT135250.10197605082079224No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)