FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004827651

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827651
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13208087
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGATC1289313697.61546846261689No Hit
NAGATC537950.4072883529613334No Hit
CAGCTC327100.24765130635496269No Hit
CAGTTC299100.22645217282411903No Hit
CAGATT263370.19940056421493893No Hit
CAGATA255390.19335881115864847No Hit
TAGATC247710.1875441916759028No Hit
AAGATC146700.11106831746338437No Hit
CATATC146540.11094717955749384No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)