FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004827654

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827654
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13164419
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGATC1282506697.42219538894956No Hit
NAGATC812810.6174294513111441No Hit
CAGCTC312330.23725315944440845No Hit
CAGTTC286620.2177232432361808No Hit
CAGATT265900.20198384752110973No Hit
CAGATA255820.19432684420026436No Hit
TAGATC247040.18765735122833754No Hit
AAGATC150650.1144372569727536No Hit
CATATC141160.1072284314256482No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)