FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004827660

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827660
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12658178
Sequences flagged as poor quality0
Sequence length6
%GC83

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTCC1234723697.54354852649409No Hit
NCGTCC513170.4054058964884204No Hit
CTGTCC341060.2694384610486596No Hit
CCGTAC264610.20904272321024397No Hit
CCTTCC258690.2043659047929331No Hit
CCGTCT244420.19309256039850284No Hit
TCGTCC186090.14701167893199163No Hit
CCGTTC162590.12844660582273373No Hit
CCGCCC145980.11532465414848803No Hit
CCATCC142570.11263074353986807No Hit
ACGTCC140650.11111393756668615No Hit
CCGTCA127810.10097029762103205No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)