FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004827666

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827666
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13916311
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTCA1350736997.06141950981119No Hit
ATGTCG1108900.7968347358721718No Hit
NTGTCA540290.3882422575925473No Hit
ATTTCA327960.2356659031261949No Hit
ATGTCC323910.23275564910844548No Hit
ATGTTA211130.1517140569796119No Hit
ATGACA183650.1319674445332531No Hit
ATGTAA168030.12074320558084681No Hit
ATATCA156880.11273102476654913No Hit
ATGCCA156800.11267353826743308No Hit
CTGTCA142240.1022109954283143No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)