FastQCFastQC Report
Fri 10 May 2024
EGAF00004827668

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827668
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13916311
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC360740.25922099613899113No Hit
CCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCCGGGTACT257320.18490532440673396No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC254750.18305857062263126No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT186050.13369203950673422No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA169380.12171329025342996No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT164250.11802696849761406No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG157100.11288911263911822No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA150540.10817521971160317No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT149650.10753568240893724No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT148660.1068242869823763No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)