FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004827669

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827669
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13854712
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTCA1344290897.02769714736762No Hit
ATGTCG1097100.7918605597864466No Hit
NTGTCA566370.4087923300029622No Hit
ATTTCA332760.24017821518051044No Hit
ATGTCC326340.23554441261572234No Hit
ATGTTA208970.1508295517077511No Hit
ATGACA184450.13313160172510263No Hit
ATGTAA168250.12143882889806733No Hit
ATATCA162910.11758454452174827No Hit
ATGCCA160780.11604716142782326No Hit
CTGTCA145420.10496068052515274No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)