FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004827672

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827672
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13819425
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTCA1338376696.84748822762162No Hit
ATGTCG1101940.7973848405414841No Hit
NTGTCA840800.6084189465191207No Hit
ATGTCC320190.2316956023857722No Hit
ATTTCA318180.23024112797746651No Hit
ATGTTA213970.1548327806692391No Hit
ATGACA190290.13769748017735906No Hit
ATGTAA165790.11996881201641892No Hit
ATATCA156730.11341282289241413No Hit
ATGCCA155220.11232015803841332No Hit
CTGTCA146240.10582205844309732No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)