FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004827675

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827675
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14455154
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCAA1408512897.44017946816754No Hit
NGTCAA798120.5521352453249546No Hit
AGTTAA314360.2174726052728321No Hit
AGTCAG301280.2084239296239943No Hit
AGACAA285870.19776337215086054No Hit
AGTCAC272570.18856250165166002No Hit
AGTCCA260940.1805169284256674No Hit
ATTCAA212190.14679193317483852No Hit
AGCCAA206630.1429455542293081No Hit
AGGCAA163410.11304618408077838No Hit
CGTCAA153930.10648796961969412No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)