FastQCFastQC Report
Fri 10 May 2024
EGAF00004827679

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827679
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14341298
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAATCTTTAAACCGATGAGCAACCTCACTCTTGTGTGCATCTCGACGAA281550.19632114192174235No Hit
CCCAAATCTTTAAACCGATGAGCAACCTCACTCTTGTGTGCATCTCGACG185410.12928397415631418No Hit
CTCTTTTGTTGCCTTGGGCTTGTGTTTCACAAGCTCAACAAGTGCAGTTT161830.11284194777906435No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)