FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004827681

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827681
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14393734
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCAA1404949497.60840376791734No Hit
NGTCAA691890.4806883328537265No Hit
AGTTAA305520.21225902882462602No Hit
AGTCAG302200.20995246959545033No Hit
AGTCAC267580.18590033691049176No Hit
AGACAA264870.1840175732023393No Hit
AGTCCA253860.1763684114212476No Hit
ATTCAA208630.14494501565750764No Hit
AGCCAA189340.13154335073859222No Hit
AGGCAA161200.11199317703106088No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)