FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004827684

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827684
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12404840
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTTCC1205270697.16131767922843No Hit
NGTTCC684430.5517443191528468No Hit
AGTTCT422860.34088307467085427No Hit
AGTTTC381670.3076782933113204No Hit
ATTTCC274030.2209057109966755No Hit
CGTTCC194250.15659210437216442No Hit
AGTTCA186920.15068312045943358No Hit
AGATCC181080.14597528061627557No Hit
AGCTCC168030.13545519329552014No Hit
AGTTAC144500.11648679063978253No Hit
AGTTCG144420.11642229968302695No Hit
AGGTCC135640.10934441717910105No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)