FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004827696

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827696
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13937745
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGATGT1364958697.93252782282931No Hit
NGATGT737360.5290382339467395No Hit
CGACGT207450.14884043293947477No Hit
CGAAGT196390.14090514642074453No Hit
TGATGT195690.14040291309677427No Hit
CGCTGT153530.11015411747022205No Hit
CGATGA144120.10340266664370742No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)