FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004827699

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827699
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13946761
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGATGT1367233798.03234600492544No Hit
NGATGT680090.48763293498755733No Hit
CGACGT193020.13839772546471543No Hit
TGATGT191110.1370282318597128No Hit
CGAAGT188690.1352930619518037No Hit
CGCTGT154980.11112257534204537No Hit
CGATGA142880.10244672580249994No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)