FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004827705

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827705
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12165216
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGACCA1189712897.7962742297383No Hit
NGACCA640980.5268957000023674No Hit
TGACCC325410.2674921678332715No Hit
TGACAA259060.2129514182074531No Hit
TGACTA234870.19306685553302136No Hit
TGATCA180760.1485875795382507No Hit
TTACCA177240.14569408385350494No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)