FastQCFastQC Report
Wed 8 May 2024
EGAF00004827708

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827708
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12205893
Total Bases73.2 Mbp
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGACCA1194981097.90197243249634No Hit
NGACCA589150.48267668740009434No Hit
TGACCC334620.27414626688928045No Hit
TGACAA252320.20671981968054284No Hit
TGACTA230020.18844995609907442No Hit
TGATCA177760.14563457175972294No Hit
TTACCA176110.14428276570997303No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)