FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004827711

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827711
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12181141
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGATC1190041897.69542935263618No Hit
NAGATC671010.5508597265231557No Hit
CAGTTC239600.19669750149021342No Hit
CAGATT233420.1916240851329116No Hit
CAGCTC231990.19045013927677218No Hit
CAGATA213490.17526272785119226No Hit
TAGATC213340.17513958667747134No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)