FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004827720

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827720
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13226848
Sequences flagged as poor quality0
Sequence length6
%GC83

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTCC1290975797.60267147547171No Hit
NCGTCC730540.5523160166352558No Hit
CTGTCC331350.25051319860937393No Hit
CCGTAC256690.19406739988242097No Hit
CCGTCT248030.1875201106113868No Hit
CCTTCC243950.18443547548138453No Hit
TCGTCC187430.14170420647458865No Hit
CCGTTC160670.12147262900427978No Hit
CCATCC139410.10539926065529746No Hit
CCGCCC138020.10434836780463493No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)