FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004827726

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827726
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13143998
Sequences flagged as poor quality0
Sequence length6
%GC83

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTCC1284825797.74999204960318No Hit
NCGTCC634400.48265375572942115No Hit
CTGTCC328550.24996199786396803No Hit
CCGTAC250330.19045194620388714No Hit
CCGTCT245010.18640447145533648No Hit
CCTTCC235950.1795115915264138No Hit
TCGTCC183340.13948571812016405No Hit
CCGTTC153210.11656270793711318No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)