FastQCFastQC Report
Wed 8 May 2024
EGAF00004827729

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827729
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11491689
Total Bases68.9 Mbp
Sequences flagged as poor quality0
Sequence length6
%GC83

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCGC1129135098.25666183621921No Hit
GTCTGC246440.21445063471522766No Hit
GTCCGT175210.15246670876665736No Hit
GACCGC168430.14656679274909024No Hit
GTTCGC139230.12115712494481881No Hit
GTCCCC134920.11740658836138013No Hit
GTCCGA129130.11236816450567015No Hit
GCCCGC128780.11206359656966004No Hit
GTCCAC127190.11067998794607128No Hit
GTCAGC117660.10238703814556764No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)