EGAF00004827731 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004827731
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	11491689
Sequences flagged as poor quality	0
Sequence length	100
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTT	42755	0.37205148868891247	No Hit
CCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTT	39421	0.34303921729869297	No Hit
CACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTTTCT	34394	0.2992945597466134	No Hit
CACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTTT	25793	0.2244491649573879	No Hit
CCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTT	18298	0.15922811694608163	No Hit
GTCAACCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCC	16295	0.14179812906527492	No Hit
CTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTTTCTCTTTA	15741	0.13697725373528644	No Hit
CGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTTTCTCT	14610	0.12713535843164567	No Hit
CAACCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTT	14580	0.1268743002007799	No Hit
CTTCTGTCAACCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTAT	13584	0.11820716693603525	No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC	13493	0.11741529030240899	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGACCGT	1165	50.038742	1
ACCGTTG	1565	37.54658	3
GACCGTT	1775	32.840187	2
CCGTTGA	1855	31.927954	4
GCGATTT	2045	30.789383	94
CCGTATG	2545	26.226784	4
GCATTCG	1555	24.48665	3
CGTATGG	2780	24.345713	5
GCCTATC	6355	23.0723	6
ACCCGGC	3035	22.91964	5
CCCCACA	18610	22.91245	1
CATTCGG	1680	22.663147	4
TAACCCC	3545	21.871946	9
GTTAGTT	6105	21.5617	1
CCCACAC	19800	21.391531	2
CACATGC	7730	21.103798	1
CTACCGT	3260	21.054546	1
GTCAACC	8125	20.772163	1
TCACCCG	3340	20.68929	3
GTAGGTC	2345	20.647936	2