FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004827732

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827732
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11489350
Sequences flagged as poor quality0
Sequence length6
%GC83

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCGC1128538398.22472985852116No Hit
GTCTGC247420.21534725637220556No Hit
GTCCGT177180.1542123792903863No Hit
GACCGC170060.14801533594154587No Hit
GTTCGC139810.12168660542154255No Hit
GTCCCC134930.11743919368806764No Hit
GTCCGA132750.11554178434811369No Hit
GCCCGC131330.11430585716337303No Hit
GTCCAC131020.11403604207374654No Hit
GTCAGC123140.10717751656969281No Hit
GTCCTC115140.1002145465148159No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)