FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004827735

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827735
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11521713
Sequences flagged as poor quality0
Sequence length6
%GC83

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCGC1131473098.20353969934853No Hit
GTCTGC246490.21393520217002454No Hit
GTCCGT179750.15600978778068852No Hit
GACCGC174900.15180034427172417No Hit
GTTCGC142140.1233670722400393No Hit
GTCCGA134640.11685762351483674No Hit
GTCCCC134490.11672743454033266No Hit
GCCCGC133910.11622403717225034No Hit
GTCCAC131190.11386327710124354No Hit
GTCAGC126040.1093934556432711No Hit
GTCCTC116500.10111343686481343No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)