FastQCFastQC Report
Wed 8 May 2024
EGAF00004827738

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827738
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12890254
Total Bases77.3 Mbp
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCACG1267155398.30336159396083No Hit
ATTACG257510.19977108286617162No Hit
ATCCCG256020.1986151708104433No Hit
ATCACC225830.1751943755336396No Hit
ATCACT204190.15840649842896812No Hit
ATCACA183530.1423788856294065No Hit
ATCATG179790.13947746879153816No Hit
CTCACG146250.11345781083910371No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)