FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004827741

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827741
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12896283
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCACG1267314798.26976501678817No Hit
ATCCCG261750.20296545911717354No Hit
ATTACG259230.20101140770561565No Hit
ATCACC224140.17380201721689886No Hit
ATCACT207560.16094559959641083No Hit
ATCACA190750.14791083601375682No Hit
ATCATG182540.14154466058165752No Hit
CTCACG149180.11567674189531976No Hit
ATCAAG132670.10287460348070836No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)