FastQCFastQC Report
Wed 8 May 2024
EGAF00004827744

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004827744
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12923677
Total Bases77.5 Mbp
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCACG1269698798.24593263975879No Hit
ATCCCG262280.2029453382346216No Hit
ATTACG259440.20074782122765836No Hit
ATCACC231280.17895835682058597No Hit
ATCACT208260.16114608868667948No Hit
ATCACA196830.15230185650724634No Hit
ATCATG181120.14014587334548828No Hit
CTCACG156000.12070868066417939No Hit
ATCAAG130430.10092328986556999No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)